Yes the timing information by default depends on the framerate of the video, so time intervals will be wrong. If you know it's wrong and you know the correct framerate, you can fix it in menu Video > Configure video timing > in the bottom pane you will see what Kinovea reads from the file. In your case you can change the value to 29.97 and apply, and the playback speed as well as all time dependent measurements should be correct.
If you can see two balls in just one frame, it could very well suggest that the original footage was indeed interlaced and that it got deinterlaced. When an object moves a lot between the two half-frames the deinterlacing algorithms tend to "reconstruct" the object twice.
To improve the automated tracking you can change the size of the search and object box used by the trajectory tool. For some objects it's best to reduce the "object" window to avoid tracking background. You can also adjust the position of the object manually to get the most control. This will work better with the camera higher above the ground. Then if you go to the trajectory data analysis you can find all the measurements and export them quickly to the clipboard or CSV file. This uses a smoothing pass on the data to minimize the noise introduced by the digitization process. The exact procedure is described in the "About" tab of the data analysis dialog.
Note that you can also correct the distortion of the GoPro directly in Kinovea, it will not undistort the images but it will distort the coordinate system to match the lens. The calibration procedure is not very well documented at the moment though. But in theory it could be more accurate than using the stock de-fishing algorithm of GoPro studio which will use standard values for all devices, whereas here you would calibrate exactly for your camera lens. (Depending on how the sensor is glued on the board the optical axis may not be exactly aligned with the center of the image).
This is only relevant if you are making spatial measurement on the images though, if you just do time measurements because you already know the distance between markers visible on the images I don't think you need to correct the distortion at all.