The problem may have been the framerate as I seem unable to capture in the native logitech software at more than 15 fps. However, in Windows Movie maker I am able to capture at 30 fps.
So, I uploaded to file to my website, the first, video 10, is of a kid bowling. According to VLC it is 15 fps, and doesn't really work well in Kinovea. The second, testwmm, is in 30 fps according to VLC and still doesn't work. It is listed as being 5 second long in WMP but only shows up as 2.12 s long in Kinovea.
When I have recorded in the past with my normal camcorder to a hard drive and then mpg files I have not had this problem, so I am not sure if it is a camera or file type problem.
http://peterkupfer.net/video10.wmv
http://peterkupfer.net/testwmm.wmv
Thanks in advance.